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What's the Cleanest Bagel Brand?

šŸ“… Updated February 2026ā±ļø 5 min readNEW
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TL;DR

Most grocery store bagels are ultra-processed calorie bombs loaded with preservatives like calcium propionate and inflammatory oils. Alvarado Street Bakery and One Mighty Mill are the cleanest options, using sprouted or fresh-milled grains and zero seed oils. For gluten-free, Simple Kneads wins with sourdough fermentation and olive oil instead of the usual gums and canola oil.

šŸ”‘ Key Findings

1

Thomas Bagels contain up to 20 ingredients, including preservatives banned in other countries.

2

A single bagel often contains the carbohydrate equivalent of 4-6 slices of white bread.

3

Potassium Bromate, a possible carcinogen banned in the EU, Canada, and China, is still legal in US bagel dough.

4

Sprouted bagels (like Silver Hills) have a lower glycemic index and higher protein availability than standard bagels.

The Short Answer

Most bagels in the bread aisle are garbage. They are essentially four slices of white bread compressed into a ring, preserved with calcium propionate, and softened with soybean oil and industrial dough conditioners.

The cleanest bagel is Alvarado Street Bakery. Their Sprouted Wheat Bagels are organic, use barley malt (the traditional sweetener) instead of high-fructose corn syrup, and contain no added oils.

One Mighty Mill is a close second (and arguably tastier) option using fresh-milled organic flour. For gluten-free eaters, Simple Kneads is superior to Canyon Bakehouse because it uses olive oil and sourdough fermentation rather than seed oils and heavy gums.

Why This Matters

A typical bagel is a metabolic wrecking ball. One large deli bagel can pack 350+ calories and 60g of refined carbs—causing a massive blood sugar spike followed by a crash that leaves you hungry an hour later.

To make these dense dough rings shelf-stable for weeks, manufacturers load them with:

* Preservatives like calcium propionate to stop mold.

* Dough conditioners like DATEM and enzymes to mimic freshness.

* Potassium Bromate, a "flour improver" linked to cancer that is banned in the EU, Canada, and Brazil but still legal in the US (often found in local bagel shops and industrial brands). Is Potassium Bromate Safe

Real bagels should stale in 48 hours. If your bagel stays soft on the counter for two weeks, it's not food—it's a science experiment.

What's Actually In Thomas' Bagels

Thomas' is the #1 grocery store brand. Here is why you should leave it on the shelf.

  • Enriched Bleached Flour — Stripped of nutrients, then "enriched" with synthetic vitamins.
  • Soybean Oil — An inflammatory omega-6 seed oil used to keep the bagel soft. Seed Oils
  • Calcium Propionate — A preservative linked to behavioral issues in children and potential metabolic disruption. Bread No Preservatives
  • Mono- and Diglycerides — Emulsifiers that can contain hidden trans fats.
  • Azodicarbonamide (ADA) — The infamous "yoga mat chemical" used to bleach flour. Banned in Europe. Azodicarbonamide In Bread

What to Look For

Green Flags:

  • "Sprouted" — Sprouting grains breaks down anti-nutrients and lowers the glycemic index. Is Sprouted Bread Healthier
  • "Keep Frozen" — This is the best sign a bagel has no preservatives. Real bread molds; frozen bread doesn't.
  • Barley Malt — The authentic sweetener for bagels, not sugar or corn syrup.
  • Short Ingredient List — Flour, water, yeast, salt, malt. That's it.

Red Flags:

  • "Dough Conditioners" — DATEM, L-cysteine (often derived from duck feathers or hair), and enzymes. What Are Dough Conditioners
  • Soybean or Canola Oil — Cheap fillers.
  • Potassium Bromate — Often unlisted in loose bakery bins; look for "Unbromated" on the label.

The Best Options

Ranked by ingredient purity and processing quality.

BrandProductVerdictWhy
Alvarado StreetSprouted Wheatāœ…Best Overall. Organic, sprouted, no added oil.
One Mighty MillMighty Bagelsāœ…Best Taste. Fresh-milled organic flour, clean list.
Simple KneadsSourdough GFāœ…Best Gluten-Free. Olive oil + sourdough fermentation.
Silver HillsSprouted Powerāœ…Good organic sprouted option, but uses sunflower oil.
Dave's KillerEpic Everythingāš ļøAcceptable. Organic, but has canola oil and added sugar.
Canyon BakehouseGF Bagelsāš ļøOkay for GF. Uses olive oil (good) but egg whites/gums.
Thomas'Plain Bagels🚫Avoid. Preservatives, soy oil, highly processed.
Lender'sRefrigerated🚫Avoid. The worst offender. HFCS + preservatives.

The Bottom Line

1. Buy Sprouted or Fresh Milled. Alvarado Street and One Mighty Mill differ significantly from standard processed bagels in how your body digests them.

2. Freeze Your Bagels. High-quality bagels have no preservatives. Slice them immediately and freeze them to toast later.

3. Check the Oil. Even "healthy" brands like Dave's often sneak in canola oil. Look for brands with no oil or olive oil.

FAQ

Are gluten-free bagels healthier?

Not usually. Most GF bagels (like Udi's) are made from white rice flour, tapioca starch, and gums, making them nutritionally void and high-glycemic. Is Gluten Free Bread Healthier Simple Kneads is the exception because it uses whole ancient grains and sourdough fermentation.

Is Dave's Killer Bread clean?

It is acceptable, not perfect. It is organic and non-GMO, which is great. However, it contains added sugar (cane sugar) and expeller-pressed canola oil. It is miles better than Thomas', but not as clean as Alvarado Street. Is Daves Killer Bread Clean

What about scooping my bagel?

"Scooping" (removing the soft doughy inside) significantly reduces the carbohydrate load. Since a bagel can have 50-60g of carbs, scooping it can cut that by half, making it a much more blood-sugar-friendly option.

Why are bagels so high in calories?

Bagels are boiled before baking, which creates a dense structure. A standard 6-inch bagel is much denser than sliced bread, containing 300-360 calories before you even add cream cheese.


References (14)
  1. 1. webstaurantstore.com
  2. 2. foodisgood.com
  3. 3. newyorkerbagels.com
  4. 4. valumart.ca
  5. 5. foodisgood.com
  6. 6. misfitsmarket.com
  7. 7. traderjoes.com
  8. 8. fooducate.com
  9. 9. ewg.org
  10. 10. maxi.ca
  11. 11. kingsoopers.com
  12. 12. spoonfulapp.com
  13. 13. myfooddata.com
  14. 14. modernistcuisine.com

šŸ›’ Product Recommendations

āœ…

Sprouted Whole Grain Bagels

Food for Life (Ezekiel 4:9)

The gold standard for grocery store bagels. Made entirely from **sprouted organic grains** (wheat, barley, millet, lentils, soybeans, spelt) and zero flour, increasing nutrient bioavailability while minimizing the blood sugar spike.

Recommended
āœ…

Buckwheat Sourdough Buns

Pacha

The cleanest gluten-free option on the market, made with just two primary ingredients: **sprouted buckwheat and sea salt**. It is free from the gums, binders, and seed oils found in 99% of gluten-free breads.

Recommended
āœ…

Grain-Free Everything Bagels

AWG Bakery

A rare grain-free find that uses **organic extra virgin olive oil** instead of inflammatory seed oils. The base is arrowroot and almond flour, sweetened slightly with maple syrup rather than refined sugar.

Recommended
āœ…

Plain Pagels

Bedrock Bakers

A 'Paleo Bagel' (Pagel) made from **cassava flour and potato starch** with no gums or fillers. They are boiled like traditional bagels but remain completely grain-free, vegan, and free of vegetable oils.

Recommended
āœ…

Gluten-Free Sourdough Bagels

Bread Srsly

Uses **organic psyllium husk** and traditional sourdough fermentation to create texture without xanthan gum or eggs. The fat source is **organic olive oil**, a significant upgrade over the canola oil found in most GF brands.

Recommended
āœ…

Unbagels

Unbun

Designed for keto eaters but excellent for anyone avoiding refined grains. Made primarily from **almond flour and egg whites**, with texture provided by flax and psyllium rather than gluten or modified starches.

Recommended
āœ…

Sprouted Wheat Bagels

Trader Joe's

A surprising budget-friendly win. Unlike most TJ's bakery items, these use **sprouted wheat berries** and are sweetened with fruit juice/malt rather than high-fructose corn syrup, though they are not gluten-free.

Recommended
šŸ‘Œ

Gluten Free Bagels

Little Northern Bakehouse

A decent gluten-free option that is widely available. While it uses sunflower oil and some starches, it is **Certified Glyphosate Residue Free** and avoids the heavy use of egg whites and corn syrup solids found in competitors like Udi's.

Acceptable
šŸ‘Œ

Millet & Flax Bagels

Sami's Bakery

Made with millet flour and brown rice flour for a unique nutrient profile. **Caution:** contains some 'cultured dextrose' (a preservative) and sunflower oil, but remains far cleaner than standard commercial gluten-free bagels.

Acceptable
🚫

Premium Bagels

Franz Bakery

A highly processed commercial bagel containing **soybean oil** and a laundry list of dough conditioners like **ethoxylated mono- and diglycerides**, which are synthetic emulsifiers.

Avoid
🚫

Take & Toast Bagels

Einstein Bros

The retail version of the shop favorite is packed with **cellulose powder** (wood pulp filler) and preservatives to keep them soft on the shelf. Far removed from a fresh bakery product.

Avoid
🚫

Soft Everything Bagels

Aunt Millie's

Contains **hydrogenated soybean oil**, a source of trans fats that should be absolutely avoided. Also uses bioengineered food ingredients and synthetic dough conditioners.

Avoid
🚫

Farmhouse Bagels

Pepperidge Farm

Marketed as 'farmhouse' style but ingredients include **high fructose corn syrup** (in some varieties) or high amounts of added sugar, plus calcium propionate and sorbic acid preservatives.

Avoid
🚫

Thin Sliced Bagels

Nature's Own

Contains **DATEM** (Diacetyl Tartaric Acid Ester of Mono- and Diglycerides), a synthetic emulsifier linked to leaky gut in animal studies, along with soybean oil and artificial preservatives.

Avoid
🚫

The Alternative Bagel

Western Bagel

Diet bagels that replace real food ingredients with chemical manipulation. Contains **artificial flavors, sucralose** (an artificial sweetener), and L-cysteine (often derived from human hair or duck feathers).

Avoid
🚫

Gluten Free Bagels

Udi's

The most popular GF brand is also one of the dirtiest, relying on **canola oil, corn syrup solids**, and multiple gums to mimic bread texture. Nutritionally void compared to sourdough or sprouted options.

Avoid
🚫
Low Carb Bagels

Sola

A 'science diet' product relying on **modified wheat starch** and **wheat gluten** isolate to lower net carbs. Often contains soybean oil and a long list of industrial fibers that can cause digestive distress.

Avoid
āš ļø

The Better Bagel

Better Brand

While high in protein, this is a hyper-processed food product made from **modified wheat starch** and **wheat protein isolates**. It is not 'real food' but rather an engineered edible product.

Use Caution
āš ļø

Bagels (Plain/Everything)

Carbonaut

Low-carb product that relies on **resistant potato starch** and **bamboo fiber**. While keto-friendly, the high fiber load from non-food sources can cause significant bloating and gas for many people.

Use Caution
🚫

Plain Bagels

Great Value (Walmart)

The epitome of ultra-processed. Contains **corn meal** as a cheap filler, calcium propionate, and often high fructose corn syrup depending on the batch/supplier.

Avoid
āš ļø

Organic Bagels

Whole Foods 365

Organic certification doesn't mean healthy ingredients. These still rely on **organic expeller pressed soybean oil** and added cane sugar, making them essentially a pesticide-free version of a standard junk bagel.

Use Caution

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